PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676748238
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family DBB
Protein Properties Length: 187aa    MW: 20372.9 Da    PI: 6.5776
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676748238genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.51.8e-05433534
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                C+ +e+  ++ fC  ++  lC  C ++ H
  676748238  4 LCDACESAAAIVFCAADEAALCCPCDEKVH 33
               6**************************998 PP

2zf-B_box27.85.2e-095292238
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
               +++ C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  676748238 52 NAPSCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtHR 92
               7899*****************************66666776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.082147IPR000315B-box-type zinc finger
CDDcd000211.84E-5345No hitNo description
SMARTSM003364.8E-6447IPR000315B-box-type zinc finger
SMARTSM003361.8E-135196IPR000315B-box-type zinc finger
PROSITE profilePS501199.35196IPR000315B-box-type zinc finger
PfamPF006435.9E-75292IPR000315B-box-type zinc finger
CDDcd000213.07E-85496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MRILCDACES AAAIVFCAAD EAALCCPCDE KVHMCNKLAS RHVRVGLADP SNAPSCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HRRFLLLRQR IEFPGDKPNH ADDLGLRCKE  120
ANRQKISSGR GQESNGNGDH NMIDLNSNPQ RVQESGSTHQ EHGIDVNSTN NHQPVGAVPV  180
GAFKRES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0605701e-107AY060570.1 Arabidopsis thaliana At2g21320/F3K23.8 mRNA, complete cds.
GenBankAY1255731e-107AY125573.1 Arabidopsis thaliana At2g21320/F3K23.8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117418.11e-128PREDICTED: zinc finger protein CONSTANS-LIKE 1
RefseqXP_013660973.11e-128PREDICTED: B-box zinc finger protein 18-like
SwissprotQ9SJU51e-108BBX18_ARATH; B-box zinc finger protein 18
TrEMBLM4EQV71e-128M4EQV7_BRARP; Uncharacterized protein
STRINGBra031180.1-P1e-128(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21320.11e-110DBB family protein